Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11387542 chr2:242563008 G/GA 9.7E-11 171 25.87 24.7 10.3 KM Plot
PCPG rs113885001 chr16:8767255 G/C 1.11E-16 173 25.6 21.95 3.17 KM Plot
PCPG rs113891197 chr13:114151860 C/T 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs113897472 chr2:61580710 G/T 7.75E-5 174 21.95 32.03 10.3 KM Plot
PCPG rs113931032 chr10:69811676 T/G 0 177 25.87 18.2 2.28 KM Plot
PCPG rs11394619 chr3:80583607 G/GA 6.33E-5 177 19.53 24.53 27.4 KM Plot
PCPG rs113948318 chr8:53847247 C/T 0.000471 172 24.47 27.2 6.1 KM Plot
PCPG rs11397853 chr2:242529110 G/GA 5.02E-5 175 25.87 27.62 20.2 KM Plot
PCPG rs113991755 chr13:114166284 C/T 4.79E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs11400708 chr1:56332084 T/TC 1.72E-7 175 25.7 25.77 13.27 KM Plot
PCPG rs114033893 chr2:240712874 G/C 4.72E-9 173 26.92 23.43 6.25 KM Plot
PCPG rs114050845 chr2:24318768 G/A 0.000114 177 25.28 27.27 17.43 KM Plot
PCPG rs114099267 chr2:121547407 C/T 0.000225 176 25.53 24.23 59.77 KM Plot
PCPG rs11412359 chr16:89583628 T/TG 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs1142004 chr13:114180446 C/T 4.67E-12 177 24.17 30.33 3.32 KM Plot